Results

---
title: "Winter 2022 Thursday Hearing Screenings"
output: 
  flexdashboard::flex_dashboard:
    orientation: rows
    social: menu
    source_code: embed
    vertical_layout: scroll
    theme: 
      version: 4
      bg: "#101010"
      fg: "#101010" 
      primary: "#ED79F9"
      navbar-bg: "#3ADAC6"
      
---

```{r setup, include=FALSE}
library(flexdashboard)
```

```{r, include=FALSE}
library(tidyverse)
library(here)
library(janitor)
library(rio)
library(colorblindr)
library(gghighlight)
library(forcats)
library(ggrepel)
library(gt)
library(knitr)
library(kableExtra)
library(reactable)
library(plotly)
library(glue)
library(fs)
library(rstatix)
library(ggpubr)
library(writexl)
library(remotes)
library(profvis)

theme_set(theme_minimal(15) +
            theme(legend.position = "bottom",
                  panel.grid.major.x = element_line(colour = "gray60"),
                  panel.grid.minor.x = element_blank(),
                  panel.grid.major.y = element_blank())
          )

```

```{r, include=FALSE}
ear <- import(here("data", "hearing_screening.sav"),
               setclass = "tbl_df") %>% 
  characterize() %>% 
  janitor::clean_names() %>% 
  mutate(grade = as.factor(grade),
         school = as.factor(school),
         screen_res = as.factor(screen_res))

str(ear)


ear$grade <- factor(ear$grade, levels = c("kindergarten",
                                          "1st grade",
                                          "2nd grade"))

ear$screen_res <- factor(ear$screen_res, levels = c("pass",
                                                    "pass with OAE",
                                                    "refer",
                                                    "absent"))

ear$school

ear$school <- factor(ear$school, levels = c("Twin Oaks",
                                            "McCornack",
                                            "River Road",
                                            "Buena Vista"))


ear_res <- ear %>% 
  group_by(grade, school) %>% 
  count(screen_res)

ear %>% 
  group_by(screen_res) %>% 
  count()

screen_stat <- ear_res %>% 
  mutate(screened = screen_res == "pass" & 
           screen_res == "pass with OAE" &
           screen_res == "refer",
         absent = screen_res == "absent")

screen_stat2 <- ear %>% 
  group_by(screen_res, school) %>% 
  count() %>% 
  pivot_wider(
    names_from = screen_res,
    values_from = n
  ) %>% 
  mutate(screened = sum(`pass` + `pass with OAE` + refer),
         total_passed = sum(`pass` + `pass with OAE`),
         pass_pct = (total_passed / screened)) %>% 
  select(1, 2, 3, 7, 4, 6, 5, 8)

screen_stat3 <- ear %>% 
  group_by(screen_res, grade) %>% 
  count() %>% 
  pivot_wider(
    names_from = screen_res,
    values_from = n
  ) %>% 
  mutate(screened = sum(`pass` + `pass with OAE` + refer),
         total_passed = sum(`pass` + `pass with OAE`),
         pass_pct = (total_passed / screened)) %>% 
  select(1, 2, 3, 7, 4, 6, 5, 8)
```

# Results 

Row {.tabset}
-----------------------------------------------------------------------


```{r, include=FALSE}
ear_grade <- ear %>% 
  group_by(grade) %>% 
  count() 

ear_school <- ear %>% 
  group_by(school) %>% 
  count()

```

```{r, include=FALSE}
grd_tbl <- ear_grade %>% 
  reactable(columns = list(
    grade = colDef(name = "Grade",
                   align = "center"),
    n = colDef(name = "Total",
               align = "center",
               format = colFormat(suffix = " students"))
  ),
  striped = TRUE,
  outlined = TRUE,
  compact = TRUE,
  highlight = TRUE,
  bordered = TRUE)

grd_tbl2 <- screen_stat3 %>% 
  reactable(
    columns = list(
      grade = colDef(name = "Grade",
                      align = "center"),
      pass = colDef(name = "Total Passed with Pure Tone",
                    align = "center"),
      `pass with OAE` = colDef(name = "Total Passed with OAE",
                               align = "center"),
      `total_passed` = colDef(name = "Total Passed",
                              align = "center"),
      refer = colDef(name = "Total Referred",
                     align = "center"),
      screened = colDef(name = "Total Screened",
                        align = "center"),
      absent = colDef(name = "Total Absent",
                      align = "center"),
      pass_pct = colDef(name = "Pass Rate",
                        align = "center",
                        format = colFormat(percent = TRUE, digits = 2))),
    striped = TRUE,
    outlined = TRUE,
    compact = TRUE,
    highlight = TRUE,
    bordered = TRUE
  )

sch_tbl <- ear_school %>% 
  reactable(columns = list(
    school = colDef(name = "School",
                   align = "center"),
    n = colDef(name = "Total",
               align = "center",
               format = colFormat(suffix = " students"))
  ),
  striped = TRUE,
  outlined = TRUE,
  compact = TRUE,
  highlight = TRUE,
  bordered = TRUE)

sch_tbl2 <- screen_stat2 %>% 
  reactable(
    columns = list(
      school = colDef(name = "School",
                      align = "center"),
      pass = colDef(name = "Total Passed with Pure Tone",
                    align = "center"),
      `pass with OAE` = colDef(name = "Total Passed with OAE",
                               align = "center"),
      `total_passed` = colDef(name = "Total Passed",
                              align = "center"),
      refer = colDef(name = "Total Referred",
                     align = "center"),
      screened = colDef(name = "Total Screened",
                        align = "center"),
      absent = colDef(name = "Total Absent",
                      align = "center"),
      pass_pct = colDef(name = "Pass Rate",
                        align = "center",
                        format = colFormat(percent = TRUE, digits = 2))),
    striped = TRUE,
    outlined = TRUE,
    compact = TRUE,
    highlight = TRUE,
    bordered = TRUE
  )
```

### School

```{r, include=TRUE}
sch_tbl2
```

### Grade

```{r, include=TRUE}
grd_tbl2
```





Row {.tabset}
-----------------------------------------------------------------------

### Screening Results 

```{r, include=FALSE}

res_tbl <- ear_res %>% 
  reactable(columns = list(
    grade = colDef(name = "Grade",
                   align = "center"),
    school = colDef(name = "School",
                    align = "center"),
    screen_res = colDef(name = "Screening Result",
                        align = "center"),
    n = colDef(name = "Total",
               align = "center",
               format = colFormat(suffix = " students"))),
  striped = TRUE,
  outlined = TRUE,
  compact = TRUE,
  highlight = TRUE,
  bordered = TRUE,
  searchable = TRUE)



```

```{r, include=TRUE}
res_tbl
```